library(ggpubr)
Loading required package: magrittr

Attaching package: ‘magrittr’

The following object is masked from ‘package:purrr’:

    set_names

The following object is masked from ‘package:tidyr’:

    extract


Attaching package: ‘ggpubr’

The following object is masked from ‘package:cowplot’:

    get_legend
f74.rna.seu@meta.data <- f74.rna.seu@meta.data %>%
  rownames_to_column("cell") %>%
  left_join(annotation.df) %>%
  column_to_rownames("cell")
Joining, by = "cell"

First I have made the snap file from the cellranger fragments.tsv file. Script is multiOmic_benchmark/preprocess/fragments2snap.sh.

Following integration vignette

Barcode selection

Filtering based on number of reads per cell and ratio of fragments that are within promoters

barcode.ls = lapply(seq(snap.files), function(i){
  barcodes = barcode.ls[[i]];
  idx = which(
      barcodes$logUMI >= cutoff.logUMI.low[i] & 
      barcodes$logUMI <= cutoff.logUMI.high[i] & 
      barcodes$promoter_ratio >= cutoff.FRIP.low[i] &
      barcodes$promoter_ratio <= cutoff.FRIP.high[i]
  );
  barcodes[idx,]
});
x.sp.ls = lapply(seq(snap.files), function(i){
  barcodes = barcode.ls[[i]];
  x.sp = x.sp.ls[[i]];
  barcode.shared = intersect(x.sp@barcode, barcodes$barcode);
  x.sp = x.sp[match(barcode.shared, x.sp@barcode),];
  barcodes = barcodes[match(barcode.shared, barcodes$barcode),];
  x.sp@metaData = barcodes;
  x.sp
})
names(x.sp.ls) = sample.names;
x.sp = Reduce(snapRbind, x.sp.ls);
x.sp@metaData["sample"] = x.sp@sample;
x.sp
number of barcodes: 6043
number of bins: 0
number of genes: 0
number of peaks: 0
number of motifs: 0

Add cell-by-bin matrix

x.sp = addBmatToSnap(x.sp, bin.size = 5000)
Epoch: reading cell-bin count matrix session ...

Binarize matrix

Some items in the count matrix have abnormally high coverage perhaps due to the alignment errors. Therefore, we next remove top 0.1% items in the count matrix and then convert the remaining non-zero values to 1.

x.sp = makeBinary(x.sp, mat="bmat")
x.sp
number of barcodes: 6043
number of bins: 651791
number of genes: 0
number of peaks: 0
number of motifs: 0

Filter bins

Filter out bins overlapping w ENCODE blacklist

black_list = read.table("~/annotations/hg38.blacklist.bed.gz")
black_list.gr = GRanges(
  black_list[,1], 
  IRanges(black_list[,2], black_list[,3])
);
idy = queryHits(
  findOverlaps(x.sp@feature, black_list.gr)
);
if(length(idy) > 0){
  x.sp = x.sp[,-idy, mat="bmat"];
};
x.sp
number of barcodes: 6043
number of bins: 651765
number of genes: 0
number of peaks: 0
number of motifs: 0

Exclude bad chromosomes

chr.exclude = seqlevels(x.sp@feature)[grep("random|chrM", seqlevels(x.sp@feature))]
idy = grep(paste(chr.exclude, collapse="|"), x.sp@feature)
if(length(idy) > 0){
  x.sp = x.sp[,-idy, mat="bmat"]
}
x.sp
number of barcodes: 6043
number of bins: 650342
number of genes: 0
number of peaks: 0
number of motifs: 0

remove the top 5% bins that overlap with invariant features such as the house keeping gene promoters

bin.cov = log10(Matrix::colSums(x.sp@bmat)+1)
# bin.cov = Matrix::colSums(x.sp@bmat)
hist(
  bin.cov[bin.cov > 0], 
  xlab="log10(bin cov)", 
  main="log10(Bin Cov)", 
  col="lightblue", 
  # xlim=c(0, 5),
  breaks=100
);

bin.cutoff = quantile(bin.cov[bin.cov > 0], 0.95)
idy = which(bin.cov <= bin.cutoff & bin.cov > 0)
x.sp = x.sp[, idy, mat="bmat"];
x.sp
number of barcodes: 6043
number of bins: 539584
number of genes: 0
number of peaks: 0
number of motifs: 0

Remove any cells of bin coverage less than 1,000. The rational behind this is that some cells may have high number of unique fragments but end up with low bin coverage after filtering. This step is optional but highly recommanded.

idx = which(Matrix::rowSums(x.sp@bmat) > 1000);
x.sp = x.sp[idx,];
x.sp
number of barcodes: 5793
number of bins: 539584
number of genes: 0
number of peaks: 0
number of motifs: 0

Dimensionality reduction

Uses diffusion map algorithm w sampling technique to make it fast.

## Sample 100 cells as landmarks 
row.covs.dens <- density(
  x = x.sp@metaData[,"logUMI"], 
  bw = 'nrd', adjust = 1
)
sampling_prob <- 1 / (approx(x = row.covs.dens$x, y = row.covs.dens$y, xout = x.sp@metaData[,"logUMI"])$y + .Machine$double.eps);
set.seed(1)
idx.landmark.ds <- sort(sample(x = seq(nrow(x.sp)), size = 1000, prob = sampling_prob))
## Split between landmark and query cells
x.landmark.sp = x.sp[idx.landmark.ds,];
x.query.sp = x.sp[-idx.landmark.ds,];
## Run diffusion map on landmark
x.landmark.sp = runDiffusionMaps(
  obj= x.landmark.sp,
  input.mat="bmat", 
  num.eigs=50
);
Epoch: checking the inputs ...
Epoch: computing jaccard similarity matrix ...
Epoch: fitting regression model ...
Epoch: performing normalization ...
Epoch: computing eigen decomposition ...
Epoch: Done
x.landmark.sp@metaData$landmark = 1;
## Project query cells
x.query.sp = runDiffusionMapsExtension(
  obj1=x.landmark.sp, 
  obj2=x.query.sp,
  input.mat="bmat"
)
Epoch: checking the inputs ...
Epoch: computing jaccard similarity matrix ...
Epoch: performing normalization ...
Epoch: projecting query cells to the reference ...
Epoch: Done
x.query.sp@metaData$landmark = 0;
## Combine 
x.sp = snapRbind(x.landmark.sp, x.query.sp);
'rBind' is deprecated.
 Since R version 3.2.0, base's rbind() should work fine with S4 objects
x.sp = x.sp[order(x.sp@metaData[,"sample"])]; #IMPORTANT

To determine significant diffusion components: > We use an ad hoc method by simply looking at a pairwise plot and select the number of eigen vectors that the scatter plot starts looking like a blob. In the below example, we choose the first 15 eigen vectors.

plotDimReductPW(
    obj=x.sp, 
    eigs.dims=1:50,
    point.size=0.3,
    point.color="grey",
    point.shape=19,
    point.alpha=0.6,
    down.sample=5000,
    pdf.file.name=NULL, 
    pdf.height=7, 
    pdf.width=7
  );

Clustering and visualization

x.sp=runCluster(
    obj=x.sp,
    tmp.folder=tempdir(),
    louvain.lib="leiden",
    seed.use=10,
    resolution=0.7
  );
Epoch: checking input parameters
Epoch: finding clusters using leiden

Visualization

Make gene matrix

x.sp <- readRDS( "~/my_data/cellranger-atac110_count_30439_WSSS8038360_GRCh38-1_1_0.snapATAC.RDS")
Loading required package: SnapATAC
Loading required package: rhdf5

Attaching package: ‘SnapATAC’

The following object is masked from ‘package:liger’:

    plotGene

Repeat visualization on gmat

FeaturePlot(f74.seu, features = c('PTPRC','CD4','CD8A','CD8B','CD79A','FOXN1','EPCAM','PDGFRA','GNG4', 'FOXP3','RAG1','RAG2','NKG7','CCR7'), reduction = "umap.snap")
All cells have the same value (0) of CD79A.All cells have the same value (0) of RAG2.All cells have the same value (0) of NKG7.All cells have the same value (0) of CCR7.
DimHeatmap(f74.seu, dims = 1:6, balanced = TRUE,ncol = 1)

31 Oct 2019 09:28:40 [rsession-] CLIENT EXCEPTION (rsession-jovyan): (TypeError) : Cannot read property 'a' of null;
org/rstudio/studio/client/workbench/views/source/editors/text/ChunkPlotPage.java#52::execute
org/rstudio/studio/client/workbench/views/source/editors/text/ChunkPlotWidget.java#49::onBrowserEvent
com/google/gwt/user/client/DOM.java#1414::dispatchEvent
com/google/gwt/user/client/impl/DOMImplStandard.java#312::dispatchEvent
com/google/gwt/user/client/impl/DOMImplStandard.java#334::dispatchUnhandledEvent
com/google/gwt/core/client/impl/Impl.java#244::apply
com/google/gwt/core/client/impl/Impl.java#283::entry0
rstudio-0.js#-1::eval
Client-ID: 7beb3877-891d-4e16-98d5-f8cca1f72d5d
User-Agent: Mozilla/5.0 (Macintosh  Intel Mac OS X 10_14_6) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/77.0.3865.90 Safari/537.36

Differential analysis

DAGs_cl <- FindAllMarkers(f74.seu, min.pct = 0.2, logfc.threshold = 0.3)
Calculating cluster 1

  |                                                  | 0 % ~calculating  
  |++++                                              | 7 % ~02s          
  |+++++++                                           | 13% ~02s          
  |++++++++++                                        | 20% ~02s          
  |++++++++++++++                                    | 27% ~01s          
  |+++++++++++++++++                                 | 33% ~01s          
  |++++++++++++++++++++                              | 40% ~01s          
  |++++++++++++++++++++++++                          | 47% ~01s          
  |+++++++++++++++++++++++++++                       | 53% ~01s          
  |++++++++++++++++++++++++++++++                    | 60% ~01s          
  |++++++++++++++++++++++++++++++++++                | 67% ~01s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~00s          
  |++++++++++++++++++++++++++++++++++++++++          | 80% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~00s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=02s  
Calculating cluster 2

  |                                                  | 0 % ~calculating  
  |+                                                 | 1 % ~36s          
  |++                                                | 2 % ~33s          
  |++                                                | 4 % ~31s          
  |+++                                               | 5 % ~30s          
  |+++                                               | 6 % ~30s          
  |++++                                              | 7 % ~29s          
  |+++++                                             | 8 % ~29s          
  |+++++                                             | 9 % ~28s          
  |++++++                                            | 11% ~28s          
  |++++++                                            | 12% ~27s          
  |+++++++                                           | 13% ~27s          
  |++++++++                                          | 14% ~26s          
  |++++++++                                          | 15% ~26s          
  |+++++++++                                         | 16% ~25s          
  |+++++++++                                         | 18% ~25s          
  |++++++++++                                        | 19% ~24s          
  |++++++++++                                        | 20% ~24s          
  |+++++++++++                                       | 21% ~24s          
  |++++++++++++                                      | 22% ~23s          
  |++++++++++++                                      | 24% ~23s          
  |+++++++++++++                                     | 25% ~22s          
  |+++++++++++++                                     | 26% ~22s          
  |++++++++++++++                                    | 27% ~22s          
  |+++++++++++++++                                   | 28% ~21s          
  |+++++++++++++++                                   | 29% ~21s          
  |++++++++++++++++                                  | 31% ~20s          
  |++++++++++++++++                                  | 32% ~20s          
  |+++++++++++++++++                                 | 33% ~20s          
  |++++++++++++++++++                                | 34% ~19s          
  |++++++++++++++++++                                | 35% ~19s          
  |+++++++++++++++++++                               | 36% ~19s          
  |+++++++++++++++++++                               | 38% ~18s          
  |++++++++++++++++++++                              | 39% ~18s          
  |++++++++++++++++++++                              | 40% ~17s          
  |+++++++++++++++++++++                             | 41% ~17s          
  |++++++++++++++++++++++                            | 42% ~17s          
  |++++++++++++++++++++++                            | 44% ~16s          
  |+++++++++++++++++++++++                           | 45% ~16s          
  |+++++++++++++++++++++++                           | 46% ~16s          
  |++++++++++++++++++++++++                          | 47% ~15s          
  |+++++++++++++++++++++++++                         | 48% ~15s          
  |+++++++++++++++++++++++++                         | 49% ~15s          
  |++++++++++++++++++++++++++                        | 51% ~14s          
  |++++++++++++++++++++++++++                        | 52% ~14s          
  |+++++++++++++++++++++++++++                       | 53% ~14s          
  |++++++++++++++++++++++++++++                      | 54% ~13s          
  |++++++++++++++++++++++++++++                      | 55% ~13s          
  |+++++++++++++++++++++++++++++                     | 56% ~12s          
  |+++++++++++++++++++++++++++++                     | 58% ~12s          
  |++++++++++++++++++++++++++++++                    | 59% ~12s          
  |++++++++++++++++++++++++++++++                    | 60% ~11s          
  |+++++++++++++++++++++++++++++++                   | 61% ~11s          
  |++++++++++++++++++++++++++++++++                  | 62% ~11s          
  |++++++++++++++++++++++++++++++++                  | 64% ~12s          
  |+++++++++++++++++++++++++++++++++                 | 65% ~11s          
  |+++++++++++++++++++++++++++++++++                 | 66% ~11s          
  |++++++++++++++++++++++++++++++++++                | 67% ~10s          
  |+++++++++++++++++++++++++++++++++++               | 68% ~10s          
  |+++++++++++++++++++++++++++++++++++               | 69% ~09s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~09s          
  |++++++++++++++++++++++++++++++++++++              | 72% ~09s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~08s          
  |++++++++++++++++++++++++++++++++++++++            | 74% ~08s          
  |++++++++++++++++++++++++++++++++++++++            | 75% ~07s          
  |+++++++++++++++++++++++++++++++++++++++           | 76% ~07s          
  |+++++++++++++++++++++++++++++++++++++++           | 78% ~07s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~06s          
  |++++++++++++++++++++++++++++++++++++++++          | 80% ~06s          
  |+++++++++++++++++++++++++++++++++++++++++         | 81% ~05s          
  |++++++++++++++++++++++++++++++++++++++++++        | 82% ~05s          
  |++++++++++++++++++++++++++++++++++++++++++        | 84% ~05s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 85% ~04s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 86% ~04s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~04s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 88% ~03s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~03s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~03s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 92% ~02s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 94% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 95% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 96% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=27s  
Calculating cluster 3

  |                                                  | 0 % ~calculating  
  |+                                                 | 1 % ~24s          
  |++                                                | 2 % ~24s          
  |++                                                | 3 % ~24s          
  |+++                                               | 4 % ~24s          
  |+++                                               | 6 % ~23s          
  |++++                                              | 7 % ~23s          
  |++++                                              | 8 % ~23s          
  |+++++                                             | 9 % ~22s          
  |+++++                                             | 10% ~22s          
  |++++++                                            | 11% ~22s          
  |+++++++                                           | 12% ~22s          
  |+++++++                                           | 13% ~21s          
  |++++++++                                          | 14% ~21s          
  |++++++++                                          | 16% ~21s          
  |+++++++++                                         | 17% ~21s          
  |+++++++++                                         | 18% ~20s          
  |++++++++++                                        | 19% ~20s          
  |++++++++++                                        | 20% ~20s          
  |+++++++++++                                       | 21% ~20s          
  |++++++++++++                                      | 22% ~19s          
  |++++++++++++                                      | 23% ~19s          
  |+++++++++++++                                     | 24% ~19s          
  |+++++++++++++                                     | 26% ~19s          
  |++++++++++++++                                    | 27% ~18s          
  |++++++++++++++                                    | 28% ~18s          
  |+++++++++++++++                                   | 29% ~18s          
  |+++++++++++++++                                   | 30% ~18s          
  |++++++++++++++++                                  | 31% ~17s          
  |+++++++++++++++++                                 | 32% ~17s          
  |+++++++++++++++++                                 | 33% ~17s          
  |++++++++++++++++++                                | 34% ~17s          
  |++++++++++++++++++                                | 36% ~16s          
  |+++++++++++++++++++                               | 37% ~16s          
  |+++++++++++++++++++                               | 38% ~16s          
  |++++++++++++++++++++                              | 39% ~15s          
  |++++++++++++++++++++                              | 40% ~15s          
  |+++++++++++++++++++++                             | 41% ~15s          
  |++++++++++++++++++++++                            | 42% ~15s          
  |++++++++++++++++++++++                            | 43% ~14s          
  |+++++++++++++++++++++++                           | 44% ~14s          
  |+++++++++++++++++++++++                           | 46% ~14s          
  |++++++++++++++++++++++++                          | 47% ~13s          
  |++++++++++++++++++++++++                          | 48% ~13s          
  |+++++++++++++++++++++++++                         | 49% ~13s          
  |+++++++++++++++++++++++++                         | 50% ~13s          
  |++++++++++++++++++++++++++                        | 51% ~12s          
  |+++++++++++++++++++++++++++                       | 52% ~12s          
  |+++++++++++++++++++++++++++                       | 53% ~12s          
  |++++++++++++++++++++++++++++                      | 54% ~11s          
  |++++++++++++++++++++++++++++                      | 56% ~11s          
  |+++++++++++++++++++++++++++++                     | 57% ~11s          
  |+++++++++++++++++++++++++++++                     | 58% ~11s          
  |++++++++++++++++++++++++++++++                    | 59% ~10s          
  |++++++++++++++++++++++++++++++                    | 60% ~10s          
  |+++++++++++++++++++++++++++++++                   | 61% ~10s          
  |++++++++++++++++++++++++++++++++                  | 62% ~10s          
  |++++++++++++++++++++++++++++++++                  | 63% ~09s          
  |+++++++++++++++++++++++++++++++++                 | 64% ~09s          
  |+++++++++++++++++++++++++++++++++                 | 66% ~10s          
  |++++++++++++++++++++++++++++++++++                | 67% ~09s          
  |++++++++++++++++++++++++++++++++++                | 68% ~09s          
  |+++++++++++++++++++++++++++++++++++               | 69% ~09s          
  |+++++++++++++++++++++++++++++++++++               | 70% ~08s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~08s          
  |+++++++++++++++++++++++++++++++++++++             | 72% ~08s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~07s          
  |++++++++++++++++++++++++++++++++++++++            | 74% ~07s          
  |++++++++++++++++++++++++++++++++++++++            | 76% ~07s          
  |+++++++++++++++++++++++++++++++++++++++           | 77% ~06s          
  |+++++++++++++++++++++++++++++++++++++++           | 78% ~06s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~06s          
  |++++++++++++++++++++++++++++++++++++++++          | 80% ~05s          
  |+++++++++++++++++++++++++++++++++++++++++         | 81% ~05s          
  |++++++++++++++++++++++++++++++++++++++++++        | 82% ~05s          
  |++++++++++++++++++++++++++++++++++++++++++        | 83% ~05s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 84% ~04s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 86% ~04s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~04s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 88% ~03s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~03s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 90% ~03s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~02s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 92% ~02s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 94% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 96% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=27s  
Calculating cluster 4

  |                                                  | 0 % ~calculating  
  |+                                                 | 2 % ~02s          
  |++                                                | 4 % ~02s          
  |+++                                               | 5 % ~02s          
  |++++                                              | 7 % ~02s          
  |+++++                                             | 9 % ~02s          
  |++++++                                            | 11% ~02s          
  |+++++++                                           | 12% ~02s          
  |++++++++                                          | 14% ~02s          
  |+++++++++                                         | 16% ~02s          
  |+++++++++                                         | 18% ~02s          
  |++++++++++                                        | 20% ~02s          
  |+++++++++++                                       | 21% ~02s          
  |++++++++++++                                      | 23% ~02s          
  |+++++++++++++                                     | 25% ~02s          
  |++++++++++++++                                    | 27% ~02s          
  |+++++++++++++++                                   | 29% ~02s          
  |++++++++++++++++                                  | 30% ~02s          
  |+++++++++++++++++                                 | 32% ~02s          
  |+++++++++++++++++                                 | 34% ~02s          
  |++++++++++++++++++                                | 36% ~02s          
  |+++++++++++++++++++                               | 38% ~02s          
  |++++++++++++++++++++                              | 39% ~02s          
  |+++++++++++++++++++++                             | 41% ~02s          
  |++++++++++++++++++++++                            | 43% ~01s          
  |+++++++++++++++++++++++                           | 45% ~01s          
  |++++++++++++++++++++++++                          | 46% ~01s          
  |+++++++++++++++++++++++++                         | 48% ~01s          
  |+++++++++++++++++++++++++                         | 50% ~01s          
  |++++++++++++++++++++++++++                        | 52% ~01s          
  |+++++++++++++++++++++++++++                       | 54% ~01s          
  |++++++++++++++++++++++++++++                      | 55% ~01s          
  |+++++++++++++++++++++++++++++                     | 57% ~01s          
  |++++++++++++++++++++++++++++++                    | 59% ~01s          
  |+++++++++++++++++++++++++++++++                   | 61% ~01s          
  |++++++++++++++++++++++++++++++++                  | 62% ~01s          
  |+++++++++++++++++++++++++++++++++                 | 64% ~01s          
  |++++++++++++++++++++++++++++++++++                | 66% ~01s          
  |++++++++++++++++++++++++++++++++++                | 68% ~01s          
  |+++++++++++++++++++++++++++++++++++               | 70% ~01s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~01s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~01s          
  |++++++++++++++++++++++++++++++++++++++            | 75% ~01s          
  |+++++++++++++++++++++++++++++++++++++++           | 77% ~01s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++         | 80% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++        | 82% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++        | 84% ~00s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 86% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 88% ~00s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~00s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 95% ~00s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 96% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 98% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=03s  
Calculating cluster 5

  |                                                  | 0 % ~calculating  
  |+                                                 | 1 % ~07s          
  |++                                                | 3 % ~07s          
  |++                                                | 4 % ~07s          
  |+++                                               | 5 % ~07s          
  |++++                                              | 7 % ~07s          
  |++++                                              | 8 % ~07s          
  |+++++                                             | 9 % ~06s          
  |++++++                                            | 11% ~06s          
  |++++++                                            | 12% ~06s          
  |+++++++                                           | 13% ~06s          
  |++++++++                                          | 14% ~06s          
  |++++++++                                          | 16% ~06s          
  |+++++++++                                         | 17% ~06s          
  |++++++++++                                        | 18% ~06s          
  |++++++++++                                        | 20% ~06s          
  |+++++++++++                                       | 21% ~06s          
  |++++++++++++                                      | 22% ~06s          
  |++++++++++++                                      | 24% ~06s          
  |+++++++++++++                                     | 25% ~05s          
  |++++++++++++++                                    | 26% ~05s          
  |++++++++++++++                                    | 28% ~05s          
  |+++++++++++++++                                   | 29% ~05s          
  |++++++++++++++++                                  | 30% ~05s          
  |++++++++++++++++                                  | 32% ~05s          
  |+++++++++++++++++                                 | 33% ~05s          
  |++++++++++++++++++                                | 34% ~05s          
  |++++++++++++++++++                                | 36% ~05s          
  |+++++++++++++++++++                               | 37% ~05s          
  |++++++++++++++++++++                              | 38% ~05s          
  |++++++++++++++++++++                              | 39% ~04s          
  |+++++++++++++++++++++                             | 41% ~04s          
  |++++++++++++++++++++++                            | 42% ~04s          
  |++++++++++++++++++++++                            | 43% ~04s          
  |+++++++++++++++++++++++                           | 45% ~04s          
  |++++++++++++++++++++++++                          | 46% ~04s          
  |++++++++++++++++++++++++                          | 47% ~04s          
  |+++++++++++++++++++++++++                         | 49% ~04s          
  |+++++++++++++++++++++++++                         | 50% ~04s          
  |++++++++++++++++++++++++++                        | 51% ~04s          
  |+++++++++++++++++++++++++++                       | 53% ~04s          
  |+++++++++++++++++++++++++++                       | 54% ~03s          
  |++++++++++++++++++++++++++++                      | 55% ~03s          
  |+++++++++++++++++++++++++++++                     | 57% ~03s          
  |+++++++++++++++++++++++++++++                     | 58% ~03s          
  |++++++++++++++++++++++++++++++                    | 59% ~03s          
  |+++++++++++++++++++++++++++++++                   | 61% ~03s          
  |+++++++++++++++++++++++++++++++                   | 62% ~03s          
  |++++++++++++++++++++++++++++++++                  | 63% ~03s          
  |+++++++++++++++++++++++++++++++++                 | 64% ~03s          
  |+++++++++++++++++++++++++++++++++                 | 66% ~03s          
  |++++++++++++++++++++++++++++++++++                | 67% ~02s          
  |+++++++++++++++++++++++++++++++++++               | 68% ~02s          
  |+++++++++++++++++++++++++++++++++++               | 70% ~02s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~02s          
  |+++++++++++++++++++++++++++++++++++++             | 72% ~02s          
  |+++++++++++++++++++++++++++++++++++++             | 74% ~02s          
  |++++++++++++++++++++++++++++++++++++++            | 75% ~02s          
  |+++++++++++++++++++++++++++++++++++++++           | 76% ~02s          
  |+++++++++++++++++++++++++++++++++++++++           | 78% ~02s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~02s          
  |+++++++++++++++++++++++++++++++++++++++++         | 80% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++         | 82% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++        | 83% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 84% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 86% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 88% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 92% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 95% ~00s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 96% ~00s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=07s  
Calculating cluster 6

  |                                                  | 0 % ~calculating  
  |+                                                 | 1 % ~13s          
  |++                                                | 2 % ~14s          
  |++                                                | 3 % ~14s          
  |+++                                               | 4 % ~13s          
  |+++                                               | 5 % ~13s          
  |++++                                              | 6 % ~13s          
  |++++                                              | 7 % ~13s          
  |+++++                                             | 9 % ~13s          
  |+++++                                             | 10% ~13s          
  |++++++                                            | 11% ~12s          
  |++++++                                            | 12% ~12s          
  |+++++++                                           | 13% ~12s          
  |+++++++                                           | 14% ~12s          
  |++++++++                                          | 15% ~12s          
  |++++++++                                          | 16% ~12s          
  |+++++++++                                         | 17% ~11s          
  |++++++++++                                        | 18% ~11s          
  |++++++++++                                        | 19% ~11s          
  |+++++++++++                                       | 20% ~11s          
  |+++++++++++                                       | 21% ~11s          
  |++++++++++++                                      | 22% ~11s          
  |++++++++++++                                      | 23% ~11s          
  |+++++++++++++                                     | 24% ~10s          
  |+++++++++++++                                     | 26% ~10s          
  |++++++++++++++                                    | 27% ~10s          
  |++++++++++++++                                    | 28% ~10s          
  |+++++++++++++++                                   | 29% ~10s          
  |+++++++++++++++                                   | 30% ~10s          
  |++++++++++++++++                                  | 31% ~09s          
  |++++++++++++++++                                  | 32% ~09s          
  |+++++++++++++++++                                 | 33% ~09s          
  |++++++++++++++++++                                | 34% ~09s          
  |++++++++++++++++++                                | 35% ~09s          
  |+++++++++++++++++++                               | 36% ~09s          
  |+++++++++++++++++++                               | 37% ~09s          
  |++++++++++++++++++++                              | 38% ~08s          
  |++++++++++++++++++++                              | 39% ~08s          
  |+++++++++++++++++++++                             | 40% ~08s          
  |+++++++++++++++++++++                             | 41% ~08s          
  |++++++++++++++++++++++                            | 43% ~08s          
  |++++++++++++++++++++++                            | 44% ~08s          
  |+++++++++++++++++++++++                           | 45% ~08s          
  |+++++++++++++++++++++++                           | 46% ~07s          
  |++++++++++++++++++++++++                          | 47% ~07s          
  |++++++++++++++++++++++++                          | 48% ~07s          
  |+++++++++++++++++++++++++                         | 49% ~07s          
  |+++++++++++++++++++++++++                         | 50% ~07s          
  |++++++++++++++++++++++++++                        | 51% ~07s          
  |+++++++++++++++++++++++++++                       | 52% ~07s          
  |+++++++++++++++++++++++++++                       | 53% ~06s          
  |++++++++++++++++++++++++++++                      | 54% ~06s          
  |++++++++++++++++++++++++++++                      | 55% ~06s          
  |+++++++++++++++++++++++++++++                     | 56% ~06s          
  |+++++++++++++++++++++++++++++                     | 57% ~06s          
  |++++++++++++++++++++++++++++++                    | 59% ~06s          
  |++++++++++++++++++++++++++++++                    | 60% ~05s          
  |+++++++++++++++++++++++++++++++                   | 61% ~05s          
  |+++++++++++++++++++++++++++++++                   | 62% ~05s          
  |++++++++++++++++++++++++++++++++                  | 63% ~05s          
  |++++++++++++++++++++++++++++++++                  | 64% ~05s          
  |+++++++++++++++++++++++++++++++++                 | 65% ~05s          
  |+++++++++++++++++++++++++++++++++                 | 66% ~05s          
  |++++++++++++++++++++++++++++++++++                | 67% ~04s          
  |+++++++++++++++++++++++++++++++++++               | 68% ~04s          
  |+++++++++++++++++++++++++++++++++++               | 69% ~04s          
  |++++++++++++++++++++++++++++++++++++              | 70% ~04s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~04s          
  |+++++++++++++++++++++++++++++++++++++             | 72% ~04s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~04s          
  |++++++++++++++++++++++++++++++++++++++            | 74% ~03s          
  |++++++++++++++++++++++++++++++++++++++            | 76% ~03s          
  |+++++++++++++++++++++++++++++++++++++++           | 77% ~03s          
  |+++++++++++++++++++++++++++++++++++++++           | 78% ~03s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~03s          
  |++++++++++++++++++++++++++++++++++++++++          | 80% ~03s          
  |+++++++++++++++++++++++++++++++++++++++++         | 81% ~03s          
  |+++++++++++++++++++++++++++++++++++++++++         | 82% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++        | 83% ~02s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 84% ~02s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 85% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 86% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~02s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 88% ~02s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 90% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 94% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 95% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 96% ~01s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~00s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~00s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=13s  
Calculating cluster 7

  |                                                  | 0 % ~calculating  
  |+                                                 | 1 % ~02m 24s      
  |++                                                | 2 % ~02m 23s      
  |++                                                | 3 % ~02m 20s      
  |+++                                               | 4 % ~02m 18s      
  |+++                                               | 5 % ~02m 15s      
  |++++                                              | 6 % ~02m 12s      
  |++++                                              | 7 % ~02m 29s      
  |+++++                                             | 8 % ~02m 24s      
  |+++++                                             | 9 % ~02m 20s      
  |++++++                                            | 10% ~02m 17s      
  |++++++                                            | 11% ~02m 14s      
  |+++++++                                           | 12% ~02m 11s      
  |+++++++                                           | 13% ~02m 09s      
  |++++++++                                          | 14% ~02m 06s      
  |++++++++                                          | 15% ~02m 04s      
  |+++++++++                                         | 16% ~02m 02s      
  |+++++++++                                         | 17% ~01m 60s      
  |++++++++++                                        | 18% ~01m 58s      
  |++++++++++                                        | 19% ~01m 56s      
  |+++++++++++                                       | 20% ~01m 54s      
  |+++++++++++                                       | 21% ~01m 53s      
  |++++++++++++                                      | 22% ~01m 51s      
  |++++++++++++                                      | 23% ~01m 49s      
  |+++++++++++++                                     | 24% ~01m 47s      
  |+++++++++++++                                     | 25% ~01m 45s      
  |++++++++++++++                                    | 26% ~01m 43s      
  |++++++++++++++                                    | 27% ~01m 42s      
  |+++++++++++++++                                   | 28% ~01m 40s      
  |+++++++++++++++                                   | 29% ~01m 39s      
  |++++++++++++++++                                  | 30% ~01m 37s      
  |++++++++++++++++                                  | 31% ~01m 35s      
  |+++++++++++++++++                                 | 32% ~01m 34s      
  |+++++++++++++++++                                 | 33% ~01m 32s      
  |++++++++++++++++++                                | 34% ~01m 31s      
  |++++++++++++++++++                                | 35% ~01m 29s      
  |+++++++++++++++++++                               | 36% ~01m 31s      
  |+++++++++++++++++++                               | 37% ~01m 29s      
  |++++++++++++++++++++                              | 38% ~01m 28s      
  |++++++++++++++++++++                              | 39% ~01m 26s      
  |+++++++++++++++++++++                             | 40% ~01m 25s      
  |+++++++++++++++++++++                             | 41% ~01m 23s      
  |++++++++++++++++++++++                            | 42% ~01m 22s      
  |++++++++++++++++++++++                            | 43% ~01m 20s      
  |+++++++++++++++++++++++                           | 44% ~01m 19s      
  |+++++++++++++++++++++++                           | 45% ~01m 17s      
  |++++++++++++++++++++++++                          | 46% ~01m 15s      
  |++++++++++++++++++++++++                          | 47% ~01m 14s      
  |+++++++++++++++++++++++++                         | 48% ~01m 12s      
  |+++++++++++++++++++++++++                         | 49% ~01m 11s      
  |++++++++++++++++++++++++++                        | 51% ~01m 09s      
  |++++++++++++++++++++++++++                        | 52% ~01m 08s      
  |+++++++++++++++++++++++++++                       | 53% ~01m 06s      
  |+++++++++++++++++++++++++++                       | 54% ~01m 05s      
  |++++++++++++++++++++++++++++                      | 55% ~01m 03s      
  |++++++++++++++++++++++++++++                      | 56% ~01m 02s      
  |+++++++++++++++++++++++++++++                     | 57% ~01m 00s      
  |+++++++++++++++++++++++++++++                     | 58% ~59s          
  |++++++++++++++++++++++++++++++                    | 59% ~01m 04s      
  |++++++++++++++++++++++++++++++                    | 60% ~01m 03s      
  |+++++++++++++++++++++++++++++++                   | 61% ~01m 01s      
  |+++++++++++++++++++++++++++++++                   | 62% ~59s          
  |++++++++++++++++++++++++++++++++                  | 63% ~57s          
  |++++++++++++++++++++++++++++++++                  | 64% ~56s          
  |+++++++++++++++++++++++++++++++++                 | 65% ~54s          
  |+++++++++++++++++++++++++++++++++                 | 66% ~52s          
  |++++++++++++++++++++++++++++++++++                | 67% ~51s          
  |++++++++++++++++++++++++++++++++++                | 68% ~49s          
  |+++++++++++++++++++++++++++++++++++               | 69% ~47s          
  |+++++++++++++++++++++++++++++++++++               | 70% ~46s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~44s          
  |++++++++++++++++++++++++++++++++++++              | 72% ~42s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~41s          
  |+++++++++++++++++++++++++++++++++++++             | 74% ~39s          
  |++++++++++++++++++++++++++++++++++++++            | 75% ~38s          
  |++++++++++++++++++++++++++++++++++++++            | 76% ~36s          
  |+++++++++++++++++++++++++++++++++++++++           | 77% ~34s          
  |+++++++++++++++++++++++++++++++++++++++           | 78% ~33s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~31s          
  |++++++++++++++++++++++++++++++++++++++++          | 80% ~30s          
  |+++++++++++++++++++++++++++++++++++++++++         | 81% ~28s          
  |+++++++++++++++++++++++++++++++++++++++++         | 82% ~27s          
  |++++++++++++++++++++++++++++++++++++++++++        | 83% ~25s          
  |++++++++++++++++++++++++++++++++++++++++++        | 84% ~24s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 85% ~22s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 86% ~21s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~19s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 88% ~18s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~16s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 90% ~15s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~13s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 92% ~12s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~10s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 94% ~09s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 95% ~07s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 96% ~06s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~04s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~03s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=02m 22s
Calculating cluster 8

  |                                                  | 0 % ~calculating  
  |+                                                 | 1 % ~01m 34s      
  |++                                                | 2 % ~01m 32s      
  |++                                                | 3 % ~01m 34s      
  |+++                                               | 4 % ~01m 32s      
  |+++                                               | 5 % ~01m 59s      
  |++++                                              | 6 % ~01m 53s      
  |++++                                              | 7 % ~01m 48s      
  |+++++                                             | 8 % ~01m 45s      
  |+++++                                             | 9 % ~01m 41s      
  |++++++                                            | 10% ~01m 38s      
  |++++++                                            | 11% ~01m 36s      
  |+++++++                                           | 12% ~01m 34s      
  |+++++++                                           | 13% ~01m 32s      
  |++++++++                                          | 14% ~01m 30s      
  |++++++++                                          | 15% ~01m 28s      
  |+++++++++                                         | 16% ~01m 27s      
  |+++++++++                                         | 17% ~01m 25s      
  |++++++++++                                        | 18% ~01m 24s      
  |++++++++++                                        | 19% ~01m 23s      
  |+++++++++++                                       | 20% ~01m 21s      
  |+++++++++++                                       | 21% ~01m 20s      
  |++++++++++++                                      | 22% ~01m 19s      
  |++++++++++++                                      | 23% ~01m 17s      
  |+++++++++++++                                     | 24% ~01m 16s      
  |+++++++++++++                                     | 26% ~01m 15s      
  |++++++++++++++                                    | 27% ~01m 14s      
  |++++++++++++++                                    | 28% ~01m 12s      
  |+++++++++++++++                                   | 29% ~01m 11s      
  |+++++++++++++++                                   | 30% ~01m 10s      
  |++++++++++++++++                                  | 31% ~01m 09s      
  |++++++++++++++++                                  | 32% ~01m 08s      
  |+++++++++++++++++                                 | 33% ~01m 07s      
  |+++++++++++++++++                                 | 34% ~01m 06s      
  |++++++++++++++++++                                | 35% ~01m 05s      
  |++++++++++++++++++                                | 36% ~01m 04s      
  |+++++++++++++++++++                               | 37% ~01m 03s      
  |+++++++++++++++++++                               | 38% ~01m 02s      
  |++++++++++++++++++++                              | 39% ~01m 00s      
  |++++++++++++++++++++                              | 40% ~59s          
  |+++++++++++++++++++++                             | 41% ~58s          
  |+++++++++++++++++++++                             | 42% ~57s          
  |++++++++++++++++++++++                            | 43% ~56s          
  |++++++++++++++++++++++                            | 44% ~55s          
  |+++++++++++++++++++++++                           | 45% ~54s          
  |+++++++++++++++++++++++                           | 46% ~53s          
  |++++++++++++++++++++++++                          | 47% ~52s          
  |++++++++++++++++++++++++                          | 48% ~51s          
  |+++++++++++++++++++++++++                         | 49% ~50s          
  |+++++++++++++++++++++++++                         | 50% ~49s          
  |++++++++++++++++++++++++++                        | 51% ~48s          
  |+++++++++++++++++++++++++++                       | 52% ~47s          
  |+++++++++++++++++++++++++++                       | 53% ~46s          
  |++++++++++++++++++++++++++++                      | 54% ~45s          
  |++++++++++++++++++++++++++++                      | 55% ~44s          
  |+++++++++++++++++++++++++++++                     | 56% ~43s          
  |+++++++++++++++++++++++++++++                     | 57% ~42s          
  |++++++++++++++++++++++++++++++                    | 58% ~41s          
  |++++++++++++++++++++++++++++++                    | 59% ~40s          
  |+++++++++++++++++++++++++++++++                   | 60% ~39s          
  |+++++++++++++++++++++++++++++++                   | 61% ~38s          
  |++++++++++++++++++++++++++++++++                  | 62% ~37s          
  |++++++++++++++++++++++++++++++++                  | 63% ~36s          
  |+++++++++++++++++++++++++++++++++                 | 64% ~35s          
  |+++++++++++++++++++++++++++++++++                 | 65% ~34s          
  |++++++++++++++++++++++++++++++++++                | 66% ~33s          
  |++++++++++++++++++++++++++++++++++                | 67% ~33s          
  |+++++++++++++++++++++++++++++++++++               | 68% ~32s          
  |+++++++++++++++++++++++++++++++++++               | 69% ~31s          
  |++++++++++++++++++++++++++++++++++++              | 70% ~30s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~28s          
  |+++++++++++++++++++++++++++++++++++++             | 72% ~27s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~26s          
  |++++++++++++++++++++++++++++++++++++++            | 74% ~25s          
  |++++++++++++++++++++++++++++++++++++++            | 76% ~24s          
  |+++++++++++++++++++++++++++++++++++++++           | 77% ~23s          
  |+++++++++++++++++++++++++++++++++++++++           | 78% ~22s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~21s          
  |++++++++++++++++++++++++++++++++++++++++          | 80% ~20s          
  |+++++++++++++++++++++++++++++++++++++++++         | 81% ~19s          
  |+++++++++++++++++++++++++++++++++++++++++         | 82% ~18s          
  |++++++++++++++++++++++++++++++++++++++++++        | 83% ~17s          
  |++++++++++++++++++++++++++++++++++++++++++        | 84% ~16s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 85% ~15s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 86% ~14s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~13s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 88% ~12s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~11s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 90% ~10s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~09s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 92% ~08s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~07s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 94% ~06s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 95% ~05s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 96% ~04s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~03s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=01m 39s
Calculating cluster 9

  |                                                  | 0 % ~calculating  
  |+                                                 | 1 % ~01m 35s      
  |+                                                 | 2 % ~01m 35s      
  |++                                                | 3 % ~01m 33s      
  |++                                                | 4 % ~01m 34s      
  |+++                                               | 5 % ~01m 33s      
  |+++                                               | 6 % ~01m 31s      
  |++++                                              | 7 % ~01m 29s      
  |++++                                              | 8 % ~01m 28s      
  |+++++                                             | 9 % ~01m 27s      
  |+++++                                             | 10% ~01m 26s      
  |++++++                                            | 11% ~01m 26s      
  |++++++                                            | 12% ~01m 24s      
  |+++++++                                           | 13% ~01m 23s      
  |+++++++                                           | 14% ~01m 22s      
  |++++++++                                          | 15% ~01m 21s      
  |++++++++                                          | 16% ~01m 20s      
  |+++++++++                                         | 17% ~01m 19s      
  |+++++++++                                         | 18% ~01m 19s      
  |++++++++++                                        | 19% ~01m 18s      
  |++++++++++                                        | 20% ~01m 16s      
  |+++++++++++                                       | 21% ~01m 16s      
  |+++++++++++                                       | 22% ~01m 15s      
  |++++++++++++                                      | 23% ~01m 14s      
  |++++++++++++                                      | 24% ~01m 13s      
  |+++++++++++++                                     | 25% ~01m 12s      
  |+++++++++++++                                     | 26% ~01m 11s      
  |++++++++++++++                                    | 27% ~01m 10s      
  |++++++++++++++                                    | 28% ~01m 09s      
  |+++++++++++++++                                   | 29% ~01m 08s      
  |+++++++++++++++                                   | 30% ~01m 07s      
  |++++++++++++++++                                  | 31% ~01m 06s      
  |++++++++++++++++                                  | 32% ~01m 05s      
  |+++++++++++++++++                                 | 33% ~01m 04s      
  |+++++++++++++++++                                 | 34% ~01m 03s      
  |++++++++++++++++++                                | 35% ~01m 02s      
  |++++++++++++++++++                                | 36% ~01m 01s      
  |+++++++++++++++++++                               | 37% ~01m 00s      
  |+++++++++++++++++++                               | 38% ~59s          
  |++++++++++++++++++++                              | 39% ~58s          
  |++++++++++++++++++++                              | 40% ~57s          
  |+++++++++++++++++++++                             | 41% ~56s          
  |+++++++++++++++++++++                             | 42% ~58s          
  |++++++++++++++++++++++                            | 43% ~57s          
  |++++++++++++++++++++++                            | 44% ~56s          
  |+++++++++++++++++++++++                           | 45% ~55s          
  |+++++++++++++++++++++++                           | 46% ~54s          
  |++++++++++++++++++++++++                          | 47% ~52s          
  |++++++++++++++++++++++++                          | 48% ~51s          
  |+++++++++++++++++++++++++                         | 49% ~50s          
  |+++++++++++++++++++++++++                         | 50% ~49s          
  |++++++++++++++++++++++++++                        | 51% ~48s          
  |++++++++++++++++++++++++++                        | 52% ~47s          
  |+++++++++++++++++++++++++++                       | 53% ~46s          
  |+++++++++++++++++++++++++++                       | 54% ~45s          
  |++++++++++++++++++++++++++++                      | 55% ~44s          
  |++++++++++++++++++++++++++++                      | 56% ~43s          
  |+++++++++++++++++++++++++++++                     | 57% ~42s          
  |+++++++++++++++++++++++++++++                     | 58% ~41s          
  |++++++++++++++++++++++++++++++                    | 59% ~40s          
  |++++++++++++++++++++++++++++++                    | 60% ~39s          
  |+++++++++++++++++++++++++++++++                   | 61% ~38s          
  |+++++++++++++++++++++++++++++++                   | 62% ~37s          
  |++++++++++++++++++++++++++++++++                  | 63% ~36s          
  |++++++++++++++++++++++++++++++++                  | 64% ~35s          
  |+++++++++++++++++++++++++++++++++                 | 65% ~34s          
  |+++++++++++++++++++++++++++++++++                 | 66% ~33s          
  |++++++++++++++++++++++++++++++++++                | 67% ~32s          
  |++++++++++++++++++++++++++++++++++                | 68% ~31s          
  |+++++++++++++++++++++++++++++++++++               | 69% ~30s          
  |+++++++++++++++++++++++++++++++++++               | 70% ~29s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~28s          
  |++++++++++++++++++++++++++++++++++++              | 72% ~27s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~26s          
  |+++++++++++++++++++++++++++++++++++++             | 74% ~25s          
  |++++++++++++++++++++++++++++++++++++++            | 75% ~25s          
  |++++++++++++++++++++++++++++++++++++++            | 76% ~24s          
  |+++++++++++++++++++++++++++++++++++++++           | 77% ~23s          
  |+++++++++++++++++++++++++++++++++++++++           | 78% ~22s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~21s          
  |++++++++++++++++++++++++++++++++++++++++          | 80% ~20s          
  |+++++++++++++++++++++++++++++++++++++++++         | 81% ~19s          
  |+++++++++++++++++++++++++++++++++++++++++         | 82% ~18s          
  |++++++++++++++++++++++++++++++++++++++++++        | 83% ~17s          
  |++++++++++++++++++++++++++++++++++++++++++        | 84% ~16s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 85% ~15s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 86% ~14s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~13s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 88% ~12s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~11s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 90% ~10s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~09s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 92% ~08s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~07s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 94% ~06s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 95% ~05s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 96% ~04s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~03s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~01s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=01m 39s
Calculating cluster 10

  |                                                  | 0 % ~calculating  
  |+                                                 | 1 % ~02m 55s      
  |++                                                | 2 % ~02m 47s      
  |++                                                | 3 % ~02m 43s      
  |+++                                               | 4 % ~02m 40s      
  |+++                                               | 5 % ~02m 37s      
  |++++                                              | 6 % ~02m 34s      
  |++++                                              | 7 % ~02m 33s      
  |+++++                                             | 8 % ~02m 31s      
  |+++++                                             | 9 % ~02m 28s      
  |++++++                                            | 10% ~02m 27s      
  |++++++                                            | 11% ~02m 25s      
  |+++++++                                           | 12% ~02m 22s      
  |+++++++                                           | 13% ~02m 20s      
  |++++++++                                          | 14% ~02m 18s      
  |++++++++                                          | 15% ~02m 17s      
  |+++++++++                                         | 16% ~02m 15s      
  |+++++++++                                         | 18% ~02m 13s      
  |++++++++++                                        | 19% ~02m 18s      
  |++++++++++                                        | 20% ~02m 16s      
  |+++++++++++                                       | 21% ~02m 14s      
  |+++++++++++                                       | 22% ~02m 12s      
  |++++++++++++                                      | 23% ~02m 10s      
  |++++++++++++                                      | 24% ~02m 08s      
  |+++++++++++++                                     | 25% ~02m 06s      
  |+++++++++++++                                     | 26% ~02m 04s      
  |++++++++++++++                                    | 27% ~02m 02s      
  |++++++++++++++                                    | 28% ~01m 60s      
  |+++++++++++++++                                   | 29% ~01m 58s      
  |+++++++++++++++                                   | 30% ~01m 56s      
  |++++++++++++++++                                  | 31% ~01m 54s      
  |++++++++++++++++                                  | 32% ~01m 52s      
  |+++++++++++++++++                                 | 33% ~01m 50s      
  |++++++++++++++++++                                | 34% ~01m 49s      
  |++++++++++++++++++                                | 35% ~01m 47s      
  |+++++++++++++++++++                               | 36% ~01m 45s      
  |+++++++++++++++++++                               | 37% ~01m 43s      
  |++++++++++++++++++++                              | 38% ~01m 42s      
  |++++++++++++++++++++                              | 39% ~01m 40s      
  |+++++++++++++++++++++                             | 40% ~01m 38s      
  |+++++++++++++++++++++                             | 41% ~01m 37s      
  |++++++++++++++++++++++                            | 42% ~01m 37s      
  |++++++++++++++++++++++                            | 43% ~01m 35s      
  |+++++++++++++++++++++++                           | 44% ~01m 34s      
  |+++++++++++++++++++++++                           | 45% ~01m 32s      
  |++++++++++++++++++++++++                          | 46% ~01m 30s      
  |++++++++++++++++++++++++                          | 47% ~01m 28s      
  |+++++++++++++++++++++++++                         | 48% ~01m 26s      
  |+++++++++++++++++++++++++                         | 49% ~01m 25s      
  |++++++++++++++++++++++++++                        | 51% ~01m 23s      
  |++++++++++++++++++++++++++                        | 52% ~01m 21s      
  |+++++++++++++++++++++++++++                       | 53% ~01m 19s      
  |+++++++++++++++++++++++++++                       | 54% ~01m 18s      
  |++++++++++++++++++++++++++++                      | 55% ~01m 16s      
  |++++++++++++++++++++++++++++                      | 56% ~01m 14s      
  |+++++++++++++++++++++++++++++                     | 57% ~01m 12s      
  |+++++++++++++++++++++++++++++                     | 58% ~01m 11s      
  |++++++++++++++++++++++++++++++                    | 59% ~01m 09s      
  |++++++++++++++++++++++++++++++                    | 60% ~01m 07s      
  |+++++++++++++++++++++++++++++++                   | 61% ~01m 08s      
  |+++++++++++++++++++++++++++++++                   | 62% ~01m 06s      
  |++++++++++++++++++++++++++++++++                  | 63% ~01m 04s      
  |++++++++++++++++++++++++++++++++                  | 64% ~01m 02s      
  |+++++++++++++++++++++++++++++++++                 | 65% ~01m 01s      
  |+++++++++++++++++++++++++++++++++                 | 66% ~59s          
  |++++++++++++++++++++++++++++++++++                | 67% ~57s          
  |+++++++++++++++++++++++++++++++++++               | 68% ~55s          
  |+++++++++++++++++++++++++++++++++++               | 69% ~53s          
  |++++++++++++++++++++++++++++++++++++              | 70% ~51s          
  |++++++++++++++++++++++++++++++++++++              | 71% ~50s          
  |+++++++++++++++++++++++++++++++++++++             | 72% ~48s          
  |+++++++++++++++++++++++++++++++++++++             | 73% ~46s          
  |++++++++++++++++++++++++++++++++++++++            | 74% ~44s          
  |++++++++++++++++++++++++++++++++++++++            | 75% ~42s          
  |+++++++++++++++++++++++++++++++++++++++           | 76% ~41s          
  |+++++++++++++++++++++++++++++++++++++++           | 77% ~39s          
  |++++++++++++++++++++++++++++++++++++++++          | 78% ~37s          
  |++++++++++++++++++++++++++++++++++++++++          | 79% ~38s          
  |+++++++++++++++++++++++++++++++++++++++++         | 80% ~36s          
  |+++++++++++++++++++++++++++++++++++++++++         | 81% ~34s          
  |++++++++++++++++++++++++++++++++++++++++++        | 82% ~32s          
  |++++++++++++++++++++++++++++++++++++++++++        | 84% ~30s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 85% ~28s          
  |+++++++++++++++++++++++++++++++++++++++++++       | 86% ~26s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 87% ~24s          
  |++++++++++++++++++++++++++++++++++++++++++++      | 88% ~22s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 89% ~20s          
  |+++++++++++++++++++++++++++++++++++++++++++++     | 90% ~19s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 91% ~17s          
  |++++++++++++++++++++++++++++++++++++++++++++++    | 92% ~15s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 93% ~13s          
  |+++++++++++++++++++++++++++++++++++++++++++++++   | 94% ~11s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 95% ~09s          
  |++++++++++++++++++++++++++++++++++++++++++++++++  | 96% ~07s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~06s          
  |+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~04s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~02s          
  |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=02m 57s
DAGs_cl <- 
  DAGs_cl %>%
  mutate(positive=avg_logFC > 0)
top10_markers <- DAGs_cl %>%
  filter(positive) %>%
  group_by(cluster) %>%
  arrange(p_val_adj) %>%
  top_n(10) %>%
  pull(gene) %>%
  unique()
Selecting by positive
top10_markers <- DAGs_cl %>%
  filter(positive) %>%
  group_by(cluster) %>%
  # arrange(p_val_adj) %>%
  top_n(10,wt = - p_val_adj) %>%
  pull(gene)
DotPlot(f74.seu, features = top10_markers) +
  coord_flip()

Expression of markers in RNA data

map(1:10, ~ plot_cluster_marker_ATACvsRNA(.x))
All cells have the same value (0) of MIR4300HG.All cells have the same value (0) of NOS1.All cells have the same value (0) of RPH3A.Cannot convert object of class listggarrange into a grob.All cells have the same value (0) of C5orf66-AS2.All cells have the same value (0) of CYP3A43.
[[1]]

[[2]]

[[3]]

[[4]]

[[5]]

[[6]]

[[7]]

[[8]]

[[9]]

[[10]]

Differential analysis only between the putative T-cell clusters

Only between cluster 1 and 2

Embedding on most variable genes in ATAC (not in gene expression)

Save markers

Thoughts

---
title: "Snap ATAC data processing"
output: html_notebook
---

```{r}
suppressPackageStartupMessages({
  library(SnapATAC)
  library(leiden)
  library(umap)
  library(GenomicRanges)
  library(zoo)
  library(tidyverse)
  library(cowplot)
  library(ggpubr)
})
source("~/multiOmic_benchmark/preprocess/selectFeatures.R")
```
```{r}
## Load and embed RNA data
f74.sce.list <- readRDS("~/my_data/integrated_thymus/F74_SCElist_20191017.RDS")
f74.rna <- f74.sce.list$RNA

f74.rna.seu <- as.Seurat(f74.rna, verbose=FALSE)
integrate_features <- HVG_Seurat(f74.rna, nfeatures = 3000)
VariableFeatures(f74.rna.seu) <- integrate_features
f74.rna.seu <- ScaleData(f74.rna.seu, do.center = TRUE, verbose=FALSE)
f74.rna.seu <- RunPCA(f74.rna.seu) 
f74.rna.seu <- RunUMAP(f74.rna.seu, reduction = "pca", dims=1:50) 

## Add cell type annotation
annotation.df <- read.csv("~/my_data/F74_RNA_obs.csv")
annotation.df <- annotation.df %>%
  mutate(cell=str_remove(as.character(X), "F74_1_") %>% str_c(ifelse(batch==0,'_1', "_2"))) 

f74.rna.seu@meta.data <- f74.rna.seu@meta.data %>%
  rownames_to_column("cell") %>%
  left_join(annotation.df) %>%
  column_to_rownames("cell")

```


First I have made the snap file from the cellranger `fragments.tsv` file. Script is `multiOmic_benchmark/preprocess/fragments2snap.sh`.

Following [integration vignette](https://github.com/r3fang/SnapATAC/blob/master/examples/10X_PBMC_15K/README.md) 

### Barcode selection
Filtering based on number of reads per cell and ratio of fragments that are within promoters
```{r}
snap.files <- "~/my_data/cellranger-atac110_count_30439_WSSS8038360_GRCh38-1_1_0.snap"
sample.names <- "F74"
barcode.files <- '~/my_data/singlecell.csv'

x.sp.ls <- list(createSnap(snap.files, sample.names))
names(x.sp.ls) = sample.names
x.sp.ls

barcode.ls = lapply(seq(snap.files), function(i){
    barcodes = read.csv(
        barcode.files[i], 
        head=TRUE
    );
    # remove NO BAROCDE line
    barcodes = barcodes[2:nrow(barcodes),];
    barcodes$logUMI = log10(barcodes$passed_filters + 1);
    barcodes$promoter_ratio = (barcodes$promoter_region_fragments+1) / (barcodes$passed_filters + 1);
    barcodes
  })

plots = lapply(seq(snap.files), function(i){
    p1 = ggplot(
        barcode.ls[[i]], 
        aes(x=logUMI, y=promoter_ratio)) + 
        geom_point(size=0.3, col="grey") +
        theme_classic()	+
        ggtitle(sample.names[[i]]) +
        ylim(0, 1) + xlim(0, 6) + 
        labs(x = "log10(counts)", y="promoter ratio")
        p1
    })

## Select and viz cutoffs
cutoff.logUMI.low = 3.3
cutoff.logUMI.high = 4.8
cutoff.FRIP.low = 0.25
cutoff.FRIP.high = 0.65


plots[[1]] + 
  geom_vline(xintercept = c(cutoff.logUMI.low[1],cutoff.logUMI.high[1]), linetype=2) +
  geom_hline(yintercept = c(cutoff.FRIP.low[1],cutoff.FRIP.high[1]), linetype=2)
```
```{r}
barcode.ls = lapply(seq(snap.files), function(i){
  barcodes = barcode.ls[[i]];
  idx = which(
      barcodes$logUMI >= cutoff.logUMI.low[i] & 
      barcodes$logUMI <= cutoff.logUMI.high[i] & 
      barcodes$promoter_ratio >= cutoff.FRIP.low[i] &
      barcodes$promoter_ratio <= cutoff.FRIP.high[i]
  );
  barcodes[idx,]
});
x.sp.ls = lapply(seq(snap.files), function(i){
  barcodes = barcode.ls[[i]];
  x.sp = x.sp.ls[[i]];
  barcode.shared = intersect(x.sp@barcode, barcodes$barcode);
  x.sp = x.sp[match(barcode.shared, x.sp@barcode),];
  barcodes = barcodes[match(barcode.shared, barcodes$barcode),];
  x.sp@metaData = barcodes;
  x.sp
})
names(x.sp.ls) = sample.names;
x.sp = Reduce(snapRbind, x.sp.ls);
x.sp@metaData["sample"] = x.sp@sample;
x.sp
```

### Add cell-by-bin matrix
```{r}
x.sp = addBmatToSnap(x.sp, bin.size = 5000)
```
## Binarize matrix
Some items in the count matrix have abnormally high coverage perhaps due to the alignment errors. Therefore, we next remove top 0.1% items in the count matrix and then convert the remaining non-zero values to 1.
```{r}
x.sp = makeBinary(x.sp, mat="bmat")
x.sp
```

## Filter bins
Filter out bins overlapping w ENCODE blacklist

```{r}
black_list = read.table("~/annotations/hg38.blacklist.bed.gz")
black_list.gr = GRanges(
  black_list[,1], 
  IRanges(black_list[,2], black_list[,3])
);
idy = queryHits(
  findOverlaps(x.sp@feature, black_list.gr)
);
if(length(idy) > 0){
  x.sp = x.sp[,-idy, mat="bmat"];
};
x.sp
```

Exclude bad chromosomes
```{r}
chr.exclude = seqlevels(x.sp@feature)[grep("random|chrM", seqlevels(x.sp@feature))]
idy = grep(paste(chr.exclude, collapse="|"), x.sp@feature)
if(length(idy) > 0){
  x.sp = x.sp[,-idy, mat="bmat"]
}
x.sp
```

remove the top 5% bins that overlap with invariant features such as the house keeping gene promoters

```{r}
bin.cov = log10(Matrix::colSums(x.sp@bmat)+1)
# bin.cov = Matrix::colSums(x.sp@bmat)
hist(
  bin.cov[bin.cov > 0], 
  xlab="log10(bin cov)", 
  main="log10(Bin Cov)", 
  col="lightblue", 
  # xlim=c(0, 5),
  breaks=100
);
bin.cutoff = quantile(bin.cov[bin.cov > 0], 0.95)
idy = which(bin.cov <= bin.cutoff & bin.cov > 0)
x.sp = x.sp[, idy, mat="bmat"];
x.sp
```

Remove any cells of bin coverage less than 1,000. The rational behind this is that some cells may have high number of unique fragments but end up with low bin coverage after filtering. This step is optional but highly recommanded.
```{r}
idx = which(Matrix::rowSums(x.sp@bmat) > 1000);
x.sp = x.sp[idx,];
x.sp
```

## Dimensionality reduction
Uses diffusion map algorithm w sampling technique to make it fast.

```{r}
## Sample 100 cells as landmarks 
row.covs.dens <- density(
  x = x.sp@metaData[,"logUMI"], 
  bw = 'nrd', adjust = 1
)
sampling_prob <- 1 / (approx(x = row.covs.dens$x, y = row.covs.dens$y, xout = x.sp@metaData[,"logUMI"])$y + .Machine$double.eps);
set.seed(1)
idx.landmark.ds <- sort(sample(x = seq(nrow(x.sp)), size = 1000, prob = sampling_prob))

## Split between landmark and query cells
x.landmark.sp = x.sp[idx.landmark.ds,];
x.query.sp = x.sp[-idx.landmark.ds,];

## Run diffusion map on landmark
x.landmark.sp = runDiffusionMaps(
  obj= x.landmark.sp,
  input.mat="bmat", 
  num.eigs=50
);
x.landmark.sp@metaData$landmark = 1;

## Project query cells
x.query.sp = runDiffusionMapsExtension(
  obj1=x.landmark.sp, 
  obj2=x.query.sp,
  input.mat="bmat"
)
x.query.sp@metaData$landmark = 0;

## Combine 
x.sp = snapRbind(x.landmark.sp, x.query.sp);
x.sp = x.sp[order(x.sp@metaData[,"sample"])]; #IMPORTANT
```

To determine significant diffusion components:
> We use an ad hoc method by simply looking at a pairwise plot and select the number of eigen vectors that the scatter plot starts looking like a blob. In the below example, we choose the first 15 eigen vectors.

```{r}
plotDimReductPW(
    obj=x.sp, 
    eigs.dims=1:50,
    point.size=0.3,
    point.color="grey",
    point.shape=19,
    point.alpha=0.6,
    down.sample=5000,
    pdf.file.name=NULL, 
    pdf.height=7, 
    pdf.width=7
  );
```

## Clustering and visualization
```{r}
signif.dims = 1:16
x.sp = runKNN(
    obj=x.sp,
    eigs.dims=signif.dims,
    k=15
  );

x.sp=runCluster(
    obj=x.sp,
    tmp.folder=tempdir(),
    louvain.lib="leiden",
    seed.use=10,
    resolution=0.7
  );
```

Visualization
```{r, fig.height=5, fig.width=5}
x.sp = runViz(
 obj=x.sp, 
 tmp.folder=tempdir(),
 dims=2,
 eigs.dims=signif.dims, 
 method="umap",
 seed.use=10
)

plotViz(
    obj= x.sp,
    method="umap", 
    main="Cluster",
    point.color=x.sp@cluster, 
    point.size=0.2, 
    point.shape=19, 
    text.add=TRUE,
    text.size=1,
    text.color="black",
    down.sample=10000,
    legend.add=FALSE
  );

```


<!-- ## Outlier analysis -->
<!-- ```{r} -->
<!-- data.frame(x.sp@umap) %>% -->
<!--   mutate(cell=x.sp@barcode) %>% -->
<!--   # arrange(umap.1) -->
<!--   ggplot(aes(umap.1, umap.2)) + -->
<!--   geom_point(size=0.2) -->
<!-- ``` -->
<!-- ```{r, fig.height=5, fig.width=15} -->
<!-- outlier.ix.1 <- data.frame(x.sp@umap) %>% -->
<!--   mutate(cell=x.sp@barcode) %>% -->
<!--   rowid_to_column() %>% -->
<!--   dplyr::filter(umap.1 > 100) %>% -->
<!--   pull(rowid) -->
<!-- outlier.ix.2 <- data.frame(x.sp@umap) %>% -->
<!--   mutate(cell=x.sp@barcode) %>% -->
<!--   rowid_to_column() %>% -->
<!--   dplyr::filter(umap.2 < -50) %>% -->
<!--   pull(rowid) -->

<!-- smp.other <- sample(setdiff(1:length(x.sp@barcode), c(outlier.ix.1, outlier.ix.2)), 100) -->

<!-- long.outlier.bmat <- -->
<!--   x.sp@bmat[c(outlier.ix.1, outlier.ix.2, smp.other),] %>% -->
<!--   as.matrix() %>% -->
<!--   melt(value.name = "acc", varnames=c("barcode", "bin")) -->

<!-- # long.outlier.bmat %>% -->
<!-- #   # dplyr::filter(barcode=='AACAAAGGTAGACGCA-1') %>% -->
<!-- #   mutate(big.bins=cut(bin,breaks = 10000)) %>% -->
<!-- #   group_by(barcode) %>% -->
<!-- #   arrange(bin) %>% -->
<!-- #   mutate(runmean=rollmean(acc,k = 10000)[1:n()]) %>% -->
<!-- #   ungroup() %>% -->
<!-- #   group_by(barcode, big.bins) %>% -->
<!-- #   summarise(bin.mean=mean(runmean)) %>% -->
<!-- #   mutate(big.bins=as.numeric(big.bins)) %>% -->
<!-- #   mutate(outlier=ifelse(barcode %in% x.sp@barcode[outlier.ix], TRUE, FALSE)) %>% -->
<!-- #   ggplot(aes( big.bins, barcode, fill=bin.mean)) + -->
<!-- #   geom_tile() + -->
<!-- #   scale_fill_viridis_c() + -->
<!-- #   facet_wrap(outlier~., scales="free_y", ncol=1, nrow=2) -->
<!-- #   ungroup() %>% -->
<!-- #   ggplot(aes(bin, runmean)) + -->
<!-- #   facet_wrap(big.bins~., scale="free_x", ncol=2) + -->
<!-- #   geom_line(aes(group=barcode, color=outlier), size=0.5, alpha=0.5) -->
<!-- #    -->
<!-- ``` -->

<!-- ```{r} -->
<!-- long.outlier.bmat %>% -->
<!--   group_by(barcode) %>% -->
<!--   summarise(acc=sum(acc)) %>% -->
<!--   mutate(outlier=case_when(barcode %in% x.sp@barcode[outlier.ix.1] ~  "out1",  -->
<!--                            barcode %in% x.sp@barcode[outlier.ix.2] ~ "out2", -->
<!--                            FALSE ~ 'other')) %>% -->
<!--   # mutate(outlier=ifelse(barcode %in% x.sp@barcode[outlier.ix.2], "out2", FALSE)) %>% -->
<!--   ggplot(aes(outlier, acc)) + -->
<!--   ggbeeswarm::geom_quasirandom() -->
<!-- ``` -->


## Make gene matrix
```{r}
transcripts.gr = rtracklayer::import("~/Homo_sapiens.GRCh38.93.filtered.gtf")
colnames(transcripts.gr@elementMetadata) <- str_replace(colnames(transcripts.gr@elementMetadata), "gene_name", "name")

genes.gr <- unlist(range(split(transcripts.gr, ~ name)))  ## From transcripts to genes
genes.gr$name <- names(genes.gr)

if (GenomeInfoDb::seqlevelsStyle(genes.gr) != GenomeInfoDb::seqlevelsStyle(x.sp@feature) ) {
  GenomeInfoDb::seqlevelsStyle(genes.gr) <- GenomeInfoDb::seqlevelsStyle(x.sp@feature)
}

x.sp = createGmatFromMat(
    obj=x.sp, 
    input.mat="bmat",
    genes=genes.gr,
    do.par=TRUE,
    num.cores=10
  )

saveRDS(x.sp, file = "~/my_data/cellranger-atac110_count_30439_WSSS8038360_GRCh38-1_1_0.snapATAC.RDS")
x.sp <- readRDS( "~/my_data/cellranger-atac110_count_30439_WSSS8038360_GRCh38-1_1_0.snapATAC.RDS")
```

Repeat visualization on gmat
```{r}
## Make suerat object
f74.seu <- snapToSeurat(
    obj=x.sp, 
    eigs.dims=1:20, 
    norm=TRUE,
    scale=TRUE
    )

## Save UMAP based on SnapATAC processing
f74.seu <- RunUMAP(f74.seu, reduction = "SnapATAC", dims=signif.dims, reduction.name = "umap.snap")


f74.seu <- FindVariableFeatures(f74.seu)
f74.seu <- RunPCA(f74.seu, dims=1:50)
f74.seu <- RunUMAP(f74.seu, reduction = "pca", dims=1:50, verbose=FALSE) 

Seurat::Idents(f74.seu) <- x.sp@cluster

ggpubr::ggarrange(
  DimPlot(f74.seu, reduction = "umap") + ggtitle("gmat"),
  DimPlot(f74.seu, reduction = "umap.snap") + ggtitle("bmat - snap") 
  )

```


```{r}
plotly::ggplotly(DimPlot(f74.seu, reduction = "umap", group.by = NULL) + ggtitle("gmat"))
```

```{r, fig.height=15, fig.width=15}
FeaturePlot(f74.seu, features = c('PTPRC','CD4','CD8A','CD8B','CD79A','FOXN1','EPCAM','PDGFRA','GNG4', 'FOXP3','RAG1','RAG2','NKG7','CCR7'), reduction = "umap.snap")
```

```{r, fig.height=15, fig.width=15}
DimHeatmap(f74.seu, dims = 1:6, balanced = TRUE,ncol = 1)
```

### Differential analysis 
<!-- Snap ATAC way -->
<!-- ```{r} -->
<!-- cluster = 1 -->
<!-- DARs= findDAR( -->
<!--     obj=x.sp, -->
<!--     input.mat="gmat", -->
<!--     cluster.pos=cluster, -->
<!--     # cluster.neg = 5, -->
<!--     cluster.neg.method="random", -->
<!--     test.method="exactTest", -->
<!--     bcv=0.4, #0.4 for human, 0.1 for mouse -->
<!--     seed.use=42 -->
<!--   ); -->


<!-- gmat.cl <- x.sp@gmat[which(x.sp@cluster==cluster),] -->
<!-- gmat.neg <- x.sp@gmat[which(x.sp@cluster!=cluster),] -->

<!-- hist(as.matrix(gmat.cl), breaks=50) -->


<!-- # DARs %>% -->
<!--   # mutate(gene=colnames(x.sp@gmat)) %>% -->
<!--   # arrange() %>% -->
<!--   # filter(PValue < 0.05) -->

<!-- hist(DARs$PValue, breaks = 20) -->

<!-- DARs$FDR = p.adjust(DARs$PValue, method="BH") -->
<!-- idy = which(DARs$FDR < 5e-2 & DARs$logFC > 0) -->
<!-- plot(DARs$logCPM, DARs$logFC,  -->
<!--     pch=19, cex=0.1, col="grey",  -->
<!--     ylab="logFC", xlab="logCPM", -->
<!--     main=paste("Cluster", cluster) -->
<!--   ) -->
<!-- points(DARs$logCPM[idy],  -->
<!--     DARs$logFC[idy],  -->
<!--     pch=19,  -->
<!--     cex=0.5,  -->
<!--     col="red" -->
<!--   ) -->

<!-- ``` -->
```{r}
DAGs_cl <- FindAllMarkers(f74.seu, min.pct = 0.2, logfc.threshold = 0.3)
DAGs_cl <- 
  DAGs_cl %>%
  mutate(positive=avg_logFC > 0)
```
```{r, fig.height=14, fig.width=9}
top10_markers <- DAGs_cl %>%
  filter(positive) %>%
  group_by(cluster) %>%
  arrange(p_val_adj) %>%
  top_n(10) %>%
  pull(gene) %>%
  unique()

top10_markers <- DAGs_cl %>%
  filter(positive) %>%
  group_by(cluster) %>%
  # arrange(p_val_adj) %>%
  top_n(10,wt = - p_val_adj) %>%
  pull(gene)

DotPlot(f74.seu, features = top10_markers) +
  coord_flip()
```

Expression of markers in RNA data

```{r, fig.width=12, fig.height=16}
plot_marker_ATACvsRNA <- function(marker){
    ggpubr::ggarrange(
      FeaturePlot(f74.seu, feature=marker, reduction="umap.snap") + ggtitle("ATAC"), FeaturePlot(f74.rna.seu, feature=marker) + ggtitle("RNA")
    ) %>% annotate_figure(top=marker)
  }

plot_cluster_marker_ATACvsRNA <- function(cl){
  top10_cluster <-
    DAGs_cl %>%
    filter(positive) %>%
    filter(cluster==cl) %>%
    filter(gene %in% rownames(f74.rna.seu)) %>%
    top_n(10,wt = - p_val_adj) %>%
    pull(gene)
  ggarrange(plotlist = map(top10_cluster, ~ plot_marker_ATACvsRNA(.x)), ncol=2, nrow=5) %>% 
    annotate_figure(fig.lab=paste("Cluster", cl), fig.lab.size = 20, fig.lab.face = "bold")
  }

map(1:10, ~ plot_cluster_marker_ATACvsRNA(.x))
```

## Differential analysis only between the putative T-cell clusters
```{r, fig.width=8, fig.height=15}
t_clusters <- c("1", '2', '3', '4', '5')
DAGs_tcells <- map(t_clusters, ~ FindMarkers(f74.seu, ident.1 = .x, ident.2 = setdiff(t_clusters,.x), min.pct = 0.2, logfc.threshold = 0.3))

top20_tcells_markers <- imap(DAGs_tcells, ~ .x %>% rownames_to_column() %>% filter( avg_logFC > 0) %>% mutate(cluster=.y)) %>%
  purrr::reduce(bind_rows) %>%
  # filter(positive) %>%
  group_by(cluster) %>%
  top_n(20,wt = - p_val_adj) %>%
  pull(rowname)


DotPlot(f74.seu, features = top20_tcells_markers) +
  coord_flip() +
  ggtitle("T-cell subtypes markers (DA between clusters 1-5)")
```

Only between cluster 1 and 2
```{r}
DAGs_tcells_12 <- FindMarkers(f74.seu, ident.1 = '1', ident.2 = '2', min.pct = 0.2, logfc.threshold = 0.3)

top20_cl12_markers <- DAGs_tcells_12 %>% 
  rownames_to_column() %>% 
  filter( avg_logFC > 0) %>% 
  top_n(20,wt = - p_val_adj) %>%
  pull(rowname)

DotPlot(f74.seu, features = top20_cl12_markers) +
  coord_flip() +
  ggtitle("DA between clusters 1-2")
```



```{r}
plotly::ggplotly(DimPlot(f74.rna.seu, group.by = "annotation"))
```


## Embedding on most variable genes in ATAC (not in gene expression)
```{r}
DefaultAssay(f74.seu) <- "ACTIVITY"
f74.seu.hvgatac <- FindVariableFeatures(f74.seu)
f74.seu.hvgatac <- RunPCA(f74.seu.hvgatac, dims=1:30)
f74.seu.hvgatac <- RunUMAP(f74.seu.hvgatac, reduction = "pca", dims=1:30, verbose=FALSE) 

f74.seu.hvgatac <- AddMetaData(f74.seu.hvgatac, x.sp@cluster, col.name='SnapATAC_cluster')
DimPlot(f74.seu.hvgatac, reduction = "umap", group.by = "SnapATAC_cluster") 
```

## Save markers
```{r}
DAGs_cl %>% filter(positive) %>% write_csv("~/my_data/integrated_thymus/F74_ATAC_clusterMarkers_allVSall_20191104.csv")
imap(DAGs_tcells, ~ .x %>% 
  rownames_to_column("gene") %>%
  filter(avg_logFC > 0) %>%
  mutate(cluster=.y)) %>%
  purrr::reduce(bind_rows) %>%
  write_csv("~/my_data/integrated_thymus/F74_ATAC_clusterMarkers_1to5VS1to5_20191104.csv")

DAGs_tcells_12 %>% 
  rownames_to_column("gene") %>%
  write_csv("~/my_data/integrated_thymus/F74_ATAC_clusterMarkers_1VS2_20191104.csv")
```



## Thoughts

- There seems to be a correspondance for gene expression and accessibility in many "accessibility markers" (see Cluster 6) --> maybe integration would work better if I don't take only the most variable features in the RNA data. 



